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COATI documentation
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COATI documentation

Get started

  • Installation
  • Quick start
  • Input formats
  • Tutorials
    • Introduction
    • Original Gaussian experiment
    • Synthetic data
      • Balanced Gaussian bump
      • Unbalanced Gaussian bump
      • Cy comparison
      • BranchSync
    • Splitting and growth
    • Input adapters
    • Gastrulation
      • Mouse gastrulation
      • Pretrained full-data models
    • Held-out biological reconstruction
    • Gastrulation dynamics and mass
    • Train and inspect a cross-modal map
    • Lineage gene and peak dynamics
    • scMultisim
      • Train T
      • Train balanced COATI
      • Compare MLP + t and Ridge maps

Understand and extend

  • Configuration and extension
  • Model formulation
  • UMAP flow and growth
  • Cross-modal maps
  • Molecular trajectory readouts
  • Python API
  • Validation
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