Index B | C | D | E | F | G | L | M | P | R | S | T | V | W B balanced (coati.config.Config property) C compute_feature_dynamics() (in module coati.downstream) compute_gene_peak_dynamics() (in module coati.downstream) compute_growth() (coati.result.Result method) compute_velocity() (coati.result.Result method) compute_velocity_embedding() (coati.result.Result method) Config (class in coati.config) D decompose_mass() (in module coati.downstream) E evaluate() (coati.result.Result method) F FeatureDecoder (class in coati.downstream) find_gene_peaks() (in module coati.downstream) fit() (in module coati.training) fit_feature_decoder() (in module coati.downstream) forward() (coati.maps.PairedMap method) from_anndata() (coati.data.TemporalData class method) from_dataframe() (coati.data.TemporalData class method) from_dict() (coati.data.TemporalData class method) from_npz() (coati.data.TemporalData class method) G GenePeakDynamics (class in coati.downstream) L load() (coati.result.Result class method) load_map() (in module coati.maps) M MapConfig (class in coati.config) MassDecomposition (class in coati.downstream) multimodal (coati.config.Config property) P PairedMap (class in coati.maps) plot() (coati.downstream.GenePeakDynamics method) (coati.downstream.MassDecomposition method) (coati.result.Result method) (coati.velocity.VelocityEmbedding method) plot_dynamics() (coati.result.Result method) plot_feature_dynamics() (in module coati.downstream) plot_feature_heatmap() (in module coati.downstream) plot_gene_peak_dynamics() (in module coati.downstream) plot_growth() (coati.result.Result method) plot_mass_decomposition() (in module coati.downstream) plot_trajectory() (coati.result.Result method) plot_velocity() (coati.result.Result method) predict() (coati.downstream.FeatureDecoder method) (coati.result.Result method) predict_trajectory() (coati.result.Result method) prepare_anndata() (in module coati.anndata_io) project_secondary() (coati.result.Result method) project_velocity() (coati.result.Result method) (in module coati.velocity) R read_h5ad_features() (in module coati.downstream) Result (class in coati.result) S select_lineage() (in module coati.downstream) T TemporalData (class in coati.data) to_anndata() (coati.data.TemporalData method) train_map() (in module coati.maps) train_vector_field() (in module coati.training) V validate() (coati.downstream.FeatureDecoder method) VelocityEmbedding (class in coati.velocity) W with_parameters() (coati.config.Config method) without_times() (coati.data.TemporalData method) write_dynamics() (coati.result.Result method) write_velocity() (coati.result.Result method)